課程名稱 |
生物資訊學導論 Introduction to Bioinformatics |
開課學期 |
110-1 |
授課對象 |
學程 生物統計學程 |
授課教師 |
吳泓熹 |
課號 |
Agron5050 |
課程識別碼 |
621EU6390 |
班次 |
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學分 |
3.0 |
全/半年 |
半年 |
必/選修 |
選修 |
上課時間 |
星期五6,7,8(13:20~16:20) |
上課地點 |
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備註 |
本課程以英語授課。教室:生物產業自動化中心(鄭江樓505室) 總人數上限:45人 |
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課程簡介影片 |
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核心能力關聯 |
核心能力與課程規劃關聯圖 |
課程大綱
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課程概述 |
Bioinformatics is a rapidly evolving field, and it is actively used in multiple areas of researches. This interdisciplinary field integrates biology, statistics, and computer science together to analyze and interpret biological data. The course covers the most important and fundamental concepts, methods, and tools used in bioinformatics. Students will be able to use these bioinformatics tools to solve the problems for their own researches.
Modules in this course
- Basic bioinformatics skills: basic statistics and programming.
- Molecular evolution: Multiple sequence alignment and phylogenetic analysis.
- Next generation sequencing (NGS) analysis: Genome assembly, genome annotation, and metagenomics.
- Other topics in bioinformatics: structural biology, cloud computing, ... etc
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課程目標 |
- Understand that bioinformatics is an interdisciplinary field and communicate with researchers from different backgrounds.
- Evaluate and identity appropriate bioinformatics software for your own researches.
- Develop problem-solving skills in bioinformatics. Integrate a range of bioinformatics techniques to extract information from biological data.
- Work collaboratively in groups to solve challenges in the interdisciplinary fields.
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課程要求 |
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預期每週課後學習時數 |
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Office Hours |
另約時間 |
指定閱讀 |
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參考書目 |
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評量方式 (僅供參考) |
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週次 |
日期 |
單元主題 |
Week 1 |
09/24 |
Introduction to bioinformatics |
Week 2 |
10/01 |
- Basic statistics
- Programming in R
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Week 3 |
10/08 |
- Basic statistics
- Programming in Shell
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Week 4 |
10/15 |
Regular expression |
Week 5 |
10/22 |
Database and sequence manipulation |
Week 6 |
10/29 |
Molecular evolution - Sequence alignment |
Week 7 |
11/05 |
Molecular evolution - Phylogenetic analysis |
Week 8 |
11/12 |
Microarray |
Week 9 |
11/19 |
Modern sequencing methods |
Week 10 |
11/26 |
Genomic analysis |
Week 11 |
12/03 |
Holiday - University Games |
Week 12 |
12/10 |
Genomic analysis |
Week 13 |
12/17 |
Other topics in bioinformatics - Part 1 |
Week 14 |
12/24 |
Other topics in bioinformatics - Part 2 |
Week 15 |
12/31 |
Holiday |
Week 16 |
2022/01/07 |
Final group presentation |
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