課程資訊
課程名稱
生物資訊學導論
Introduction to Bioinformatics 
開課學期
110-1 
授課對象
學程  生物統計學程  
授課教師
吳泓熹 
課號
Agron5050 
課程識別碼
621EU6390 
班次
 
學分
3.0 
全/半年
半年 
必/選修
選修 
上課時間
星期五6,7,8(13:20~16:20) 
上課地點
 
備註
本課程以英語授課。教室:生物產業自動化中心(鄭江樓505室)
總人數上限:45人 
 
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課程概述

Bioinformatics is a rapidly evolving field, and it is actively used in multiple areas of researches. This interdisciplinary field integrates biology, statistics, and computer science together to analyze and interpret biological data. The course covers the most important and fundamental concepts, methods, and tools used in bioinformatics. Students will be able to use these bioinformatics tools to solve the problems for their own researches.

Modules in this course

  1. Basic bioinformatics skills: basic statistics and programming.
  2. Molecular evolution: Multiple sequence alignment and phylogenetic analysis.
  3. Next generation sequencing (NGS) analysis: Genome assembly, genome annotation, and metagenomics.
  4. Other topics in bioinformatics: structural biology, cloud computing, ... etc

Google meet

Google Meet
 

DirectPoll

Direct_poll
 

課程目標
  • Understand that bioinformatics is an interdisciplinary field and communicate with researchers from different backgrounds.
  • Evaluate and identity appropriate bioinformatics software for your own researches.
  • Develop problem-solving skills in bioinformatics. Integrate a range of bioinformatics techniques to extract information from biological data.
  • Work collaboratively in groups to solve challenges in the interdisciplinary fields.
 
課程要求
 
預期每週課後學習時數
 
Office Hours
另約時間 
指定閱讀
 
參考書目
 
評量方式
(僅供參考)
   
課程進度
週次
日期
單元主題
Week 1
09/24  Introduction to bioinformatics 
Week 2
10/01 


  • Basic statistics

  • Programming in R

 
Week 3
10/08 


  • Basic statistics

  • Programming in Shell

 
Week 4
10/15  Regular expression 
Week 5
10/22  Database and sequence manipulation 
Week 6
10/29  Molecular evolution - Sequence alignment 
Week 7
11/05  Molecular evolution - Phylogenetic analysis 
Week 8
11/12  Microarray 
Week 9
11/19  Modern sequencing methods 
Week 10
11/26  Genomic analysis 
Week 11
12/03  Holiday - University Games 
Week 12
12/10  Genomic analysis 
Week 13
12/17  Other topics in bioinformatics - Part 1 
Week 14
12/24  Other topics in bioinformatics - Part 2 
Week 15
12/31  Holiday 
Week 16
2022/01/07  Final group presentation